This document compares the results of at least 2 CASAL model configurations (base and at least one sensitivity) and up to 6 Casal2 model configurations (3 BetaDiff and 3 ADOL-C).
The CASAL model sensitivity 1 has a smaller minimisation tolerance value than the CASAL base model (1e-7 vs. 2e-5).
The Casal2 ADOL-C and BetaDiff low tolerance models have a smaller tolerance value than the CASAL base model (1e-7 vs. 2e-5).
The main characteristics of the Test Case BCO (ling) CASAL model are:
Observation data include:
Parameters estimated include:
## [1] "Mon Sep 27 17:06:58 2021"
## R version 3.6.3 (2020-02-29)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: Debian GNU/Linux 11 (bullseye)
##
## Matrix products: default
## BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0
##
## locale:
## [1] LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8
## [5] LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8
## [7] LC_PAPER=en_NZ.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] Casal2_21.08 casal_2.30 devtools_2.4.2 usethis_2.0.1 rlist_0.4.6.2
## [6] ggthemes_4.2.4 gridExtra_2.3 coda_0.19-4 ggmcmc_1.5.1.1 ggplot2_3.3.5
## [11] tidyr_1.1.3 huxtable_5.4.0 dplyr_1.0.7 plyr_1.8.6
##
## loaded via a namespace (and not attached):
## [1] Rcpp_1.0.7 lattice_0.20-41 prettyunits_1.1.1 ps_1.6.0
## [5] assertthat_0.2.1 rprojroot_2.0.2 digest_0.6.27 utf8_1.2.2
## [9] R6_2.5.1 evaluate_0.14 pillar_1.6.2 rlang_0.4.11
## [13] rstudioapi_0.13 data.table_1.14.0 callr_3.7.0 jquerylib_0.1.4
## [17] rmarkdown_2.11 desc_1.3.0 stringr_1.4.0 munsell_0.5.0
## [21] compiler_3.6.3 xfun_0.26 pkgconfig_2.0.3 pkgbuild_1.2.0
## [25] htmltools_0.5.2 tidyselect_1.1.1 tibble_3.1.4 reshape_0.8.8
## [29] fansi_0.5.0 crayon_1.4.1 withr_2.4.2 grid_3.6.3
## [33] jsonlite_1.7.2 GGally_2.1.2 gtable_0.3.0 lifecycle_1.0.0
## [37] DBI_1.1.1 magrittr_2.0.1 scales_1.1.1 cli_3.0.1
## [41] stringi_1.7.4 cachem_1.0.6 remotes_2.4.0 fs_1.5.0
## [45] testthat_3.0.4 bslib_0.3.0 ellipsis_0.3.2 generics_0.1.0
## [49] vctrs_0.3.8 RColorBrewer_1.1-2 tools_3.6.3 glue_1.4.2
## [53] purrr_0.3.4 processx_3.5.2 pkgload_1.2.2 fastmap_1.1.0
## [57] yaml_2.2.1 colorspace_2.0-2 sessioninfo_1.1.1 memoise_2.0.0
## [61] knitr_1.34 sass_0.4.0
source('../../R-functions/report_read_in_CASAL_MPD_files.R')
source('../../R-functions/report_read_in_Casal2_MPD_files.R')
Tables of parameter estimates and objective function components for the CASAL and Casal2 model MPD results
| rownames | Base_Model | Sensitivity_1 | Percent_Diff |
|---|---|---|---|
| initialization.B0 | 14170.00000 | 14170.00000 | 0.000 |
| recruitment.YCS1 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS2 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS3 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS4 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS5 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS6 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS7 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS8 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS9 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS10 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS11 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS12 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS13 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS14 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS15 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS16 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS17 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS18 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS19 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS20 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS21 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS22 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS23 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS24 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS25 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS26 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS27 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS28 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS29 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS30 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS31 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS32 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS33 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS34 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS35 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS36 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS37 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS38 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS39 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS40 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS41 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS42 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS43 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS44 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS45 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS46 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS47 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS48 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS49 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS50 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS51 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS52 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS53 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS54 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS55 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS56 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS57 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS58 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS59 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS60 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS61 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS62 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS63 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS64 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS65 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS66 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS67 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS68 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS69 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS70 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS71 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS72 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS73 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS74 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS75 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS76 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS77 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS78 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS79 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS80 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS81 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS82 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS83 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS84 | 0.23480 | 0.23480 | 0.000 |
| recruitment.YCS85 | 0.23160 | 0.23160 | 0.000 |
| recruitment.YCS86 | 0.23220 | 0.23220 | 0.000 |
| recruitment.YCS87 | 0.24120 | 0.24120 | 0.000 |
| recruitment.YCS88 | 0.26510 | 0.26510 | 0.000 |
| recruitment.YCS89 | 0.31720 | 0.31720 | 0.000 |
| recruitment.YCS90 | 0.42240 | 0.42240 | 0.000 |
| recruitment.YCS91 | 0.61390 | 0.61390 | 0.000 |
| recruitment.YCS92 | 0.92300 | 0.92300 | 0.000 |
| recruitment.YCS93 | 1.42900 | 1.42900 | 0.000 |
| recruitment.YCS94 | 1.48000 | 1.48000 | 0.000 |
| recruitment.YCS95 | 1.00900 | 1.00900 | 0.000 |
| recruitment.YCS96 | 0.84620 | 0.84620 | 0.000 |
| recruitment.YCS97 | 0.85550 | 0.85550 | 0.000 |
| recruitment.YCS98 | 1.08700 | 1.08700 | 0.000 |
| recruitment.YCS99 | 1.53000 | 1.53000 | 0.000 |
| recruitment.YCS100 | 1.02700 | 1.02700 | 0.000 |
| recruitment.YCS101 | 0.79990 | 0.79990 | 0.000 |
| recruitment.YCS102 | 0.82080 | 0.82080 | 0.000 |
| recruitment.YCS103 | 0.63180 | 0.63180 | 0.000 |
| recruitment.YCS104 | 0.80520 | 0.80520 | 0.000 |
| recruitment.YCS105 | 0.74530 | 0.74530 | 0.000 |
| recruitment.YCS106 | 0.46340 | 0.46340 | 0.000 |
| recruitment.YCS107 | 1.07500 | 1.07500 | 0.000 |
| recruitment.YCS108 | 0.89920 | 0.89920 | 0.000 |
| recruitment.YCS109 | 0.38510 | 0.38510 | 0.000 |
| recruitment.YCS110 | 0.91270 | 0.91270 | 0.000 |
| recruitment.YCS111 | 0.70920 | 0.70920 | 0.000 |
| recruitment.YCS112 | 0.82900 | 0.82900 | 0.000 |
| recruitment.YCS113 | 0.42330 | 0.42330 | 0.000 |
| recruitment.YCS114 | 1.27800 | 1.27800 | 0.000 |
| recruitment.YCS115 | 0.68810 | 0.68810 | 0.000 |
| recruitment.YCS116 | 0.74250 | 0.74250 | 0.000 |
| recruitment.YCS117 | 0.57050 | 0.57050 | 0.000 |
| recruitment.YCS118 | 0.45160 | 0.45160 | 0.000 |
| recruitment.YCS119 | 1.00000 | 1.00000 | 0.000 |
| recruitment.YCS120 | 1.00000 | 1.00000 | 0.000 |
| size_at_age.Linf_male | 47.12000 | 47.12000 | 0.000 |
| size_at_age.cv2_male | 0.06256 | 0.06256 | 0.000 |
| selectivity[potSsel].male1 | 3.03900 | 3.03900 | 0.000 |
| selectivity[potSsel].male2 | 0.19070 | 0.19060 | 0.052 |
| selectivity[potSsel].female1 | 3.31600 | 3.31600 | 0.000 |
| selectivity[potSsel].female2 | 1.04500 | 1.04500 | 0.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| process[Recruitment].b0 | 13871.00000 | 13879.10000 | 13871.00000 | 13871.10000 | 13879.10000 | 13871.00000 |
| age_length[asMm0].linf | 46.66120 | 46.65740 | 46.66130 | 46.66130 | 46.65730 | 46.66130 |
| age_length[asMm0].cv_last | 0.02027 | 0.02260 | 0.02027 | 0.02028 | 0.02260 | 0.02027 |
| selectivity[potSurveySel_male].a50 | 3.04313 | 3.03927 | 3.03852 | 3.02547 | 3.04823 | 3.02520 |
| selectivity[potSurveySel_male].ato95 | 0.21319 | 0.19134 | 0.19039 | 0.12587 | 0.23497 | 0.12457 |
| selectivity[potSurveySel_female].a50 | 3.32403 | 3.32488 | 3.32403 | 3.32402 | 3.32489 | 3.32403 |
| selectivity[potSurveySel_female].ato95 | 1.07886 | 1.07224 | 1.07887 | 1.07887 | 1.07225 | 1.07887 |
| process[Recruitment].ycs_values{1980} | 0.21202 | 0.21193 | 0.21202 | 0.21199 | 0.21190 | 0.21202 |
| process[Recruitment].ycs_values{1981} | 0.20885 | 0.20878 | 0.20885 | 0.20876 | 0.20877 | 0.20885 |
| process[Recruitment].ycs_values{1982} | 0.20941 | 0.20939 | 0.20941 | 0.20954 | 0.20942 | 0.20941 |
| process[Recruitment].ycs_values{1983} | 0.21760 | 0.21762 | 0.21760 | 0.21760 | 0.21763 | 0.21760 |
| process[Recruitment].ycs_values{1984} | 0.24042 | 0.24046 | 0.24042 | 0.24042 | 0.24046 | 0.24042 |
| process[Recruitment].ycs_values{1985} | 0.29290 | 0.29290 | 0.29291 | 0.29291 | 0.29290 | 0.29291 |
| process[Recruitment].ycs_values{1986} | 0.40043 | 0.40029 | 0.40043 | 0.40043 | 0.40029 | 0.40043 |
| process[Recruitment].ycs_values{1987} | 0.60038 | 0.60005 | 0.60039 | 0.60038 | 0.60004 | 0.60039 |
| process[Recruitment].ycs_values{1988} | 0.92667 | 0.92623 | 0.92661 | 0.92660 | 0.92631 | 0.92661 |
| process[Recruitment].ycs_values{1989} | 1.47526 | 1.47532 | 1.47521 | 1.47522 | 1.47513 | 1.47521 |
| process[Recruitment].ycs_values{1990} | 1.59614 | 1.59697 | 1.59625 | 1.59625 | 1.59718 | 1.59625 |
| process[Recruitment].ycs_values{1991} | 1.00472 | 1.00531 | 1.00468 | 1.00470 | 1.00525 | 1.00468 |
| process[Recruitment].ycs_values{1992} | 0.83552 | 0.83594 | 0.83556 | 0.83556 | 0.83594 | 0.83556 |
| process[Recruitment].ycs_values{1993} | 0.85248 | 0.85251 | 0.85251 | 0.85250 | 0.85251 | 0.85251 |
| process[Recruitment].ycs_values{1994} | 1.11068 | 1.10949 | 1.11052 | 1.11053 | 1.10945 | 1.11052 |
| process[Recruitment].ycs_values{1995} | 1.66456 | 1.66318 | 1.66458 | 1.66456 | 1.66332 | 1.66458 |
| process[Recruitment].ycs_values{1996} | 1.05327 | 1.05404 | 1.05334 | 1.05336 | 1.05395 | 1.05334 |
| process[Recruitment].ycs_values{1997} | 0.82392 | 0.82398 | 0.82395 | 0.82394 | 0.82399 | 0.82395 |
| process[Recruitment].ycs_values{1998} | 0.84394 | 0.84390 | 0.84390 | 0.84389 | 0.84391 | 0.84390 |
| process[Recruitment].ycs_values{1999} | 0.62169 | 0.62189 | 0.62168 | 0.62168 | 0.62189 | 0.62168 |
| process[Recruitment].ycs_values{2000} | 0.74184 | 0.74236 | 0.74184 | 0.74184 | 0.74236 | 0.74184 |
| process[Recruitment].ycs_values{2001} | 0.67333 | 0.67356 | 0.67333 | 0.67333 | 0.67356 | 0.67333 |
| process[Recruitment].ycs_values{2002} | 0.44396 | 0.44396 | 0.44396 | 0.44396 | 0.44396 | 0.44396 |
| process[Recruitment].ycs_values{2003} | 1.21010 | 1.20740 | 1.21010 | 1.21009 | 1.20740 | 1.21010 |
| process[Recruitment].ycs_values{2004} | 1.22006 | 1.21557 | 1.22005 | 1.22005 | 1.21557 | 1.22005 |
| process[Recruitment].ycs_values{2005} | 0.48932 | 0.48725 | 0.48932 | 0.48932 | 0.48725 | 0.48932 |
| process[Recruitment].ycs_values{2006} | 1.00364 | 1.00000 | 1.00363 | 1.00363 | 1.00000 | 1.00363 |
| process[Recruitment].ycs_values{2007} | 0.71187 | 0.72299 | 0.71187 | 0.71187 | 0.72300 | 0.71187 |
| process[Recruitment].ycs_values{2008} | 0.83132 | 0.83048 | 0.83132 | 0.83132 | 0.83048 | 0.83132 |
| process[Recruitment].ycs_values{2009} | 0.42153 | 0.42128 | 0.42153 | 0.42153 | 0.42128 | 0.42153 |
| process[Recruitment].ycs_values{2010} | 1.26131 | 1.26096 | 1.26131 | 1.26131 | 1.26096 | 1.26131 |
| process[Recruitment].ycs_values{2011} | 0.66527 | 0.66603 | 0.66527 | 0.66527 | 0.66603 | 0.66527 |
| process[Recruitment].ycs_values{2012} | 0.70938 | 0.70952 | 0.70938 | 0.70938 | 0.70952 | 0.70938 |
| process[Recruitment].ycs_values{2013} | 0.55184 | 0.55165 | 0.55184 | 0.55184 | 0.55165 | 0.55184 |
| process[Recruitment].ycs_values{2014} | 0.42967 | 0.42938 | 0.42967 | 0.42967 | 0.42938 | 0.42967 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| process[Recruitment].b0 | 0.000 | -0.058 | 0.000 | -0.001 | -0.058 | 0.000 |
| age_length[asMm0].linf | 0.000 | 0.008 | -0.000 | -0.000 | 0.008 | -0.000 |
| age_length[asMm0].cv_last | 0.000 | -11.507 | -0.001 | -0.079 | -11.481 | -0.001 |
| selectivity[potSurveySel_male].a50 | 0.000 | 0.127 | 0.151 | 0.580 | -0.168 | 0.589 |
| selectivity[potSurveySel_male].ato95 | 0.000 | 10.249 | 10.698 | 40.957 | -10.214 | 41.569 |
| selectivity[potSurveySel_female].a50 | 0.000 | -0.026 | 0.000 | 0.000 | -0.026 | 0.000 |
| selectivity[potSurveySel_female].ato95 | 0.000 | 0.614 | -0.001 | -0.001 | 0.613 | -0.001 |
| process[Recruitment].ycs_values{1980} | 0.000 | 0.040 | 0.000 | 0.012 | 0.054 | 0.000 |
| process[Recruitment].ycs_values{1981} | 0.000 | 0.033 | 0.000 | 0.044 | 0.037 | 0.000 |
| process[Recruitment].ycs_values{1982} | 0.000 | 0.012 | 0.000 | -0.058 | -0.002 | 0.000 |
| process[Recruitment].ycs_values{1983} | 0.000 | -0.010 | 0.000 | -0.000 | -0.012 | 0.000 |
| process[Recruitment].ycs_values{1984} | 0.000 | -0.016 | -0.000 | -0.000 | -0.016 | -0.000 |
| process[Recruitment].ycs_values{1985} | 0.000 | 0.002 | -0.001 | -0.001 | 0.002 | -0.001 |
| process[Recruitment].ycs_values{1986} | 0.000 | 0.034 | -0.000 | 0.000 | 0.034 | -0.000 |
| process[Recruitment].ycs_values{1987} | 0.000 | 0.054 | -0.002 | -0.001 | 0.055 | -0.002 |
| process[Recruitment].ycs_values{1988} | 0.000 | 0.048 | 0.006 | 0.007 | 0.039 | 0.006 |
| process[Recruitment].ycs_values{1989} | 0.000 | -0.004 | 0.003 | 0.003 | 0.009 | 0.003 |
| process[Recruitment].ycs_values{1990} | 0.000 | -0.052 | -0.007 | -0.007 | -0.065 | -0.007 |
| process[Recruitment].ycs_values{1991} | 0.000 | -0.059 | 0.004 | 0.002 | -0.053 | 0.004 |
| process[Recruitment].ycs_values{1992} | 0.000 | -0.051 | -0.005 | -0.005 | -0.051 | -0.005 |
| process[Recruitment].ycs_values{1993} | 0.000 | -0.004 | -0.003 | -0.003 | -0.004 | -0.003 |
| process[Recruitment].ycs_values{1994} | 0.000 | 0.107 | 0.014 | 0.014 | 0.111 | 0.014 |
| process[Recruitment].ycs_values{1995} | 0.000 | 0.083 | -0.001 | 0.000 | 0.074 | -0.001 |
| process[Recruitment].ycs_values{1996} | 0.000 | -0.073 | -0.007 | -0.009 | -0.065 | -0.007 |
| process[Recruitment].ycs_values{1997} | 0.000 | -0.008 | -0.004 | -0.003 | -0.009 | -0.004 |
| process[Recruitment].ycs_values{1998} | 0.000 | 0.004 | 0.004 | 0.005 | 0.003 | 0.004 |
| process[Recruitment].ycs_values{1999} | 0.000 | -0.032 | 0.001 | 0.001 | -0.033 | 0.001 |
| process[Recruitment].ycs_values{2000} | 0.000 | -0.071 | 0.000 | -0.000 | -0.071 | 0.000 |
| process[Recruitment].ycs_values{2001} | 0.000 | -0.034 | 0.001 | 0.000 | -0.034 | 0.001 |
| process[Recruitment].ycs_values{2002} | 0.000 | 0.001 | 0.000 | 0.000 | 0.001 | 0.000 |
| process[Recruitment].ycs_values{2003} | 0.000 | 0.223 | 0.000 | 0.001 | 0.223 | 0.000 |
| process[Recruitment].ycs_values{2004} | 0.000 | 0.368 | 0.001 | 0.001 | 0.368 | 0.001 |
| process[Recruitment].ycs_values{2005} | 0.000 | 0.421 | 0.000 | 0.000 | 0.421 | 0.000 |
| process[Recruitment].ycs_values{2006} | 0.000 | 0.363 | 0.001 | 0.001 | 0.363 | 0.001 |
| process[Recruitment].ycs_values{2007} | 0.000 | -1.563 | 0.000 | 0.000 | -1.563 | 0.000 |
| process[Recruitment].ycs_values{2008} | 0.000 | 0.101 | 0.000 | 0.000 | 0.101 | 0.000 |
| process[Recruitment].ycs_values{2009} | 0.000 | 0.059 | 0.000 | 0.000 | 0.059 | 0.000 |
| process[Recruitment].ycs_values{2010} | 0.000 | 0.028 | 0.000 | 0.000 | 0.028 | 0.000 |
| process[Recruitment].ycs_values{2011} | 0.000 | -0.114 | 0.000 | -0.000 | -0.114 | 0.000 |
| process[Recruitment].ycs_values{2012} | 0.000 | -0.019 | 0.000 | -0.000 | -0.019 | 0.000 |
| process[Recruitment].ycs_values{2013} | 0.000 | 0.035 | 0.000 | 0.000 | 0.034 | 0.000 |
| process[Recruitment].ycs_values{2014} | 0.000 | 0.067 | 0.000 | -0.000 | 0.067 | 0.000 |
| Component | Base_Model | Sensitivity_1 |
|---|---|---|
| potCPUE | -51.180 | -51.180 |
| potSurveyAbd | -3.254 | -3.254 |
| logbookLF | 54.660 | 54.660 |
| potCommAF | 54.410 | 54.410 |
| potSurveyAF | 118.200 | 118.200 |
| recCatchLF | 68.040 | 68.040 |
| prior_on_initialization.B0 | 9.559 | 9.559 |
| prior_on_recruitment.YCS | 9.658 | 9.658 |
| prior_on_size_at_age.Linf_male | 0.000 | 0.000 |
| prior_on_size_at_age.cv2_male | 0.000 | 0.000 |
| prior_on_selectivity[potSsel].male | 0.000 | 0.000 |
| prior_on_selectivity[potSsel].female | 0.000 | 0.000 |
| prior_on_q_qPotCPUE | -8.331 | -8.331 |
| prior_on_q_potSurveyq | -11.380 | -11.380 |
| clp1F | 0.000 | 0.000 |
| clp2F | 0.000 | 0.000 |
| clp3F | 0.000 | 0.000 |
| YCS | 0.566 | 0.566 |
| Total | 241.000 | 241.000 |
| rownames | betadiff_casal_flags_on | betadiff_casal_flags_off | betadiff_casal_flags_on_low_tol | adolc_casal_flags_on | adolc_casal_flags_off | adolc_casal_flags_on_low_tol |
|---|---|---|---|---|---|---|
| observation->potSurvey-2010 | -0.789 | -0.793 | -0.789 | -0.789 | -0.793 | -0.789 |
| observation->potSurvey-2014 | -0.931 | -0.933 | -0.931 | -0.931 | -0.933 | -0.931 |
| observation->potSurvey-2018 | -1.120 | -1.121 | -1.120 | -1.120 | -1.121 | -1.120 |
| observation->potCPUE-1990 | 1.126 | 1.129 | 1.126 | 1.125 | 1.129 | 1.126 |
| observation->potCPUE-1991 | 2.227 | 2.233 | 2.227 | 2.227 | 2.233 | 2.227 |
| observation->potCPUE-1992 | -0.686 | -0.682 | -0.686 | -0.686 | -0.682 | -0.686 |
| observation->potCPUE-1993 | -1.938 | -1.937 | -1.938 | -1.938 | -1.937 | -1.938 |
| observation->potCPUE-1994 | -2.140 | -2.140 | -2.140 | -2.140 | -2.140 | -2.140 |
| observation->potCPUE-1995 | -2.056 | -2.056 | -2.056 | -2.056 | -2.056 | -2.056 |
| observation->potCPUE-1996 | -2.194 | -2.194 | -2.194 | -2.194 | -2.194 | -2.194 |
| observation->potCPUE-1997 | -2.026 | -2.025 | -2.026 | -2.026 | -2.025 | -2.026 |
| observation->potCPUE-1998 | -2.164 | -2.165 | -2.164 | -2.164 | -2.165 | -2.164 |
| observation->potCPUE-1999 | -1.736 | -1.734 | -1.736 | -1.736 | -1.734 | -1.736 |
| observation->potCPUE-2000 | -2.194 | -2.194 | -2.194 | -2.194 | -2.194 | -2.194 |
| observation->potCPUE-2001 | -2.173 | -2.173 | -2.173 | -2.173 | -2.173 | -2.173 |
| observation->potCPUE-2002 | -2.084 | -2.084 | -2.084 | -2.084 | -2.084 | -2.084 |
| observation->potCPUE-2003 | -2.187 | -2.187 | -2.187 | -2.187 | -2.187 | -2.187 |
| observation->potCPUE-2004 | -2.185 | -2.185 | -2.185 | -2.185 | -2.185 | -2.185 |
| observation->potCPUE-2005 | -1.894 | -1.895 | -1.894 | -1.894 | -1.895 | -1.894 |
| observation->potCPUE-2006 | -1.596 | -1.601 | -1.596 | -1.596 | -1.601 | -1.596 |
| observation->potCPUE-2007 | -1.999 | -2.003 | -1.999 | -1.999 | -2.003 | -1.999 |
| observation->potCPUE-2008 | -1.932 | -1.936 | -1.932 | -1.932 | -1.936 | -1.932 |
| observation->potCPUE-2009 | -1.631 | -1.633 | -1.631 | -1.631 | -1.633 | -1.631 |
| observation->potCPUE-2010 | -2.186 | -2.186 | -2.186 | -2.186 | -2.186 | -2.186 |
| observation->potCPUE-2011 | -1.876 | -1.866 | -1.876 | -1.876 | -1.866 | -1.876 |
| observation->potCPUE-2012 | -1.908 | -1.898 | -1.908 | -1.908 | -1.898 | -1.908 |
| observation->potCPUE-2013 | -1.959 | -1.955 | -1.959 | -1.959 | -1.955 | -1.959 |
| observation->potCPUE-2014 | -1.313 | -1.311 | -1.313 | -1.313 | -1.311 | -1.313 |
| observation->potCPUE-2015 | -1.908 | -1.909 | -1.908 | -1.908 | -1.909 | -1.908 |
| observation->potCPUE-2016 | -2.082 | -2.083 | -2.082 | -2.082 | -2.083 | -2.082 |
| observation->potCPUE-2017 | -2.037 | -2.039 | -2.037 | -2.037 | -2.039 | -2.037 |
| observation->potCPUE-2018 | -1.654 | -1.650 | -1.654 | -1.654 | -1.650 | -1.654 |
| observation->AFpotSurvey-2010 | 35.036 | 35.085 | 35.036 | 35.036 | 35.085 | 35.036 |
| observation->AFpotSurvey-2014 | 38.718 | 38.720 | 38.718 | 38.718 | 38.720 | 38.718 |
| observation->AFpotSurvey-2018 | 38.821 | 38.791 | 38.821 | 38.821 | 38.791 | 38.821 |
| observation->AFpotFishing-2018 | 45.611 | 45.653 | 45.611 | 45.611 | 45.653 | 45.611 |
| observation->AFpotFishing-2019 | 7.854 | 7.854 | 7.854 | 7.854 | 7.854 | 7.854 |
| observation->lgobookLF | 51.538 | 51.541 | 51.538 | 51.537 | 51.541 | 51.538 |
| observation->rec.catch.LF | 71.222 | 72.113 | 71.222 | 71.222 | 72.113 | 71.222 |
| prior->B0->process[Recruitment].b0 | 9.538 | 9.538 | 9.538 | 9.538 | 9.538 | 9.538 |
| prior->male_Linf->age_length[asMm0].linf | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->male_cv2->age_length[asMm0].cv_last | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->potSurvey_mA50->selectivity[potSurveySel_male].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->potSurvey_mAto95->selectivity[potSurveySel_male].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->potSurvey_fA50->selectivity[potSurveySel_female].a50 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->potSurvey_fAto95->selectivity[potSurveySel_female].ato95 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 | 0.000 |
| prior->YCS->process[Recruitment].ycs_values{1980} | 1.624 | 1.625 | 1.624 | 1.624 | 1.626 | 1.624 |
| prior->YCS->process[Recruitment].ycs_values{1981} | 1.678 | 1.679 | 1.678 | 1.679 | 1.679 | 1.678 |
| prior->YCS->process[Recruitment].ycs_values{1982} | 1.668 | 1.668 | 1.668 | 1.666 | 1.668 | 1.668 |
| prior->YCS->process[Recruitment].ycs_values{1983} | 1.533 | 1.533 | 1.533 | 1.533 | 1.533 | 1.533 |
| prior->YCS->process[Recruitment].ycs_values{1984} | 1.204 | 1.204 | 1.204 | 1.204 | 1.204 | 1.204 |
| prior->YCS->process[Recruitment].ycs_values{1985} | 0.648 | 0.648 | 0.648 | 0.648 | 0.648 | 0.648 |
| prior->YCS->process[Recruitment].ycs_values{1986} | 0.028 | 0.028 | 0.028 | 0.028 | 0.028 | 0.028 |
| prior->YCS->process[Recruitment].ycs_values{1987} | -0.304 | -0.303 | -0.304 | -0.304 | -0.303 | -0.304 |
| prior->YCS->process[Recruitment].ycs_values{1988} | -0.066 | -0.067 | -0.066 | -0.066 | -0.067 | -0.066 |
| prior->YCS->process[Recruitment].ycs_values{1989} | 0.868 | 0.868 | 0.867 | 0.867 | 0.867 | 0.867 |
| prior->YCS->process[Recruitment].ycs_values{1990} | 1.095 | 1.097 | 1.096 | 1.096 | 1.097 | 1.096 |
| prior->YCS->process[Recruitment].ycs_values{1991} | 0.046 | 0.046 | 0.045 | 0.046 | 0.046 | 0.045 |
| prior->YCS->process[Recruitment].ycs_values{1992} | -0.179 | -0.178 | -0.179 | -0.179 | -0.178 | -0.179 |
| prior->YCS->process[Recruitment].ycs_values{1993} | -0.160 | -0.160 | -0.160 | -0.160 | -0.160 | -0.160 |
| prior->YCS->process[Recruitment].ycs_values{1994} | 0.214 | 0.212 | 0.214 | 0.214 | 0.212 | 0.214 |
| prior->YCS->process[Recruitment].ycs_values{1995} | 1.225 | 1.222 | 1.225 | 1.225 | 1.223 | 1.225 |
| prior->YCS->process[Recruitment].ycs_values{1996} | 0.121 | 0.122 | 0.121 | 0.121 | 0.122 | 0.121 |
| prior->YCS->process[Recruitment].ycs_values{1997} | -0.191 | -0.191 | -0.191 | -0.191 | -0.191 | -0.191 |
| prior->YCS->process[Recruitment].ycs_values{1998} | -0.169 | -0.169 | -0.169 | -0.169 | -0.169 | -0.169 |
| prior->YCS->process[Recruitment].ycs_values{1999} | -0.307 | -0.307 | -0.307 | -0.307 | -0.307 | -0.307 |
| prior->YCS->process[Recruitment].ycs_values{2000} | -0.264 | -0.264 | -0.264 | -0.264 | -0.264 | -0.264 |
| prior->YCS->process[Recruitment].ycs_values{2001} | -0.300 | -0.300 | -0.300 | -0.300 | -0.300 | -0.300 |
| prior->YCS->process[Recruitment].ycs_values{2002} | -0.107 | -0.107 | -0.107 | -0.107 | -0.107 | -0.107 |
| prior->YCS->process[Recruitment].ycs_values{2003} | 0.384 | 0.379 | 0.384 | 0.384 | 0.379 | 0.384 |
| prior->YCS->process[Recruitment].ycs_values{2004} | 0.401 | 0.393 | 0.401 | 0.401 | 0.393 | 0.401 |
| prior->YCS->process[Recruitment].ycs_values{2005} | -0.203 | -0.199 | -0.203 | -0.203 | -0.199 | -0.203 |
| prior->YCS->process[Recruitment].ycs_values{2006} | 0.044 | 0.038 | 0.044 | 0.044 | 0.038 | 0.044 |
| prior->YCS->process[Recruitment].ycs_values{2007} | -0.284 | -0.277 | -0.284 | -0.284 | -0.277 | -0.284 |
| prior->YCS->process[Recruitment].ycs_values{2008} | -0.183 | -0.184 | -0.183 | -0.183 | -0.184 | -0.183 |
| prior->YCS->process[Recruitment].ycs_values{2009} | -0.044 | -0.043 | -0.044 | -0.044 | -0.043 | -0.044 |
| prior->YCS->process[Recruitment].ycs_values{2010} | 0.474 | 0.474 | 0.474 | 0.474 | 0.474 | 0.474 |
| prior->YCS->process[Recruitment].ycs_values{2011} | -0.303 | -0.303 | -0.303 | -0.303 | -0.303 | -0.303 |
| prior->YCS->process[Recruitment].ycs_values{2012} | -0.285 | -0.285 | -0.285 | -0.285 | -0.285 | -0.285 |
| prior->YCS->process[Recruitment].ycs_values{2013} | -0.279 | -0.278 | -0.279 | -0.279 | -0.278 | -0.279 |
| prior->YCS->process[Recruitment].ycs_values{2014} | -0.068 | -0.067 | -0.068 | -0.068 | -0.067 | -0.068 |
| additional_prior->PrSurveyQ | -11.153 | -11.154 | -11.153 | -11.153 | -11.154 | -11.153 |
| additional_prior->PrCPUEQ | -8.207 | -8.208 | -8.207 | -8.207 | -8.208 | -8.207 |
| additional_prior->YCS_average_1 | 0.495 | 0.496 | 0.495 | 0.495 | 0.496 | 0.495 |
| total_negloglike | 237.802 | 238.776 | 237.802 | 237.802 | 238.776 | 237.802 |
| total_score | 237.802 | 238.776 | 237.802 | 237.802 | 238.776 | 237.802 |
## [1] "CASAL base model convergence information"
## [1] "Minimiser convergence threshold: 2e-005"
## [2] "fmm: have converged: t = 1.53773e-005 f = 240.986"
## [3] "Successful convergence in optimise"
## [4] "Minimiser achieved convergence after 91 quasi-Newton iterations using 101 objective function evaluations"
## [1] ""
## [1] "CASAL sensitivity 1 model convergence information"
## [1] "Minimiser convergence threshold: 1e-007"
## [2] "fmm: step size too small. Indicates successful convergence (though this is not the textbook ideal convergence situation)"
## [3] "Successful convergence in optimise"
## [4] "Minimiser achieved convergence after 99 quasi-Newton iterations using 119 objective function evaluations"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model convergence information"
## [1] "fmm: have converged: t = 1.80811e-05 f = 237.802"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model convergence information"
## [1] "fmm: have converged: t = 1.05483e-05 f = 238.776"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model convergence information"
## [1] "fmm: have converged: t = 2.57984e-09 f = 237.802"
## [2] "Successful convergence in optimise"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model convergence information"
## character(0)
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model convergence information"
## character(0)
## [1] "CASAL model warnings"
## NULL
## [1] ""
## [1] "CASAL sensitivity 1 model warnings"
## NULL
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on model warnings"
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 127 estimates, now have 42"
## [2] "Cannot report the length-based selectivity values. This report (__lineFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [3] "Cannot report the length-based selectivity values. This report (__lineFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [4] "Cannot report the length-based selectivity values. This report (__potFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [5] "Cannot report the length-based selectivity values. This report (__potFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [6] "Cannot report the length-based selectivity values. This report (__recFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [7] "Cannot report the length-based selectivity values. This report (__recFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [8] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
## [9] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_off model warnings"
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 127 estimates, now have 42"
## [2] "Cannot report the length-based selectivity values. This report (__lineFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [3] "Cannot report the length-based selectivity values. This report (__lineFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [4] "Cannot report the length-based selectivity values. This report (__potFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [5] "Cannot report the length-based selectivity values. This report (__potFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [6] "Cannot report the length-based selectivity values. This report (__recFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [7] "Cannot report the length-based selectivity values. This report (__recFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [1] ""
## [1] "Casal2 betadiff_casal_flags_on_low_tol model warnings"
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 127 estimates, now have 42"
## [2] "Cannot report the length-based selectivity values. This report (__lineFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [3] "Cannot report the length-based selectivity values. This report (__lineFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [4] "Cannot report the length-based selectivity values. This report (__potFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [5] "Cannot report the length-based selectivity values. This report (__potFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [6] "Cannot report the length-based selectivity values. This report (__recFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [7] "Cannot report the length-based selectivity values. This report (__recFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [8] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
## [9] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on model warnings"
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 127 estimates, now have 42"
## [2] "Cannot report the length-based selectivity values. This report (__lineFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [3] "Cannot report the length-based selectivity values. This report (__lineFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [4] "Cannot report the length-based selectivity values. This report (__potFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [5] "Cannot report the length-based selectivity values. This report (__potFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [6] "Cannot report the length-based selectivity values. This report (__recFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [7] "Cannot report the length-based selectivity values. This report (__recFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [8] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
## [9] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
## [1] ""
## [1] "Casal2 adolc_casal_flags_off model warnings"
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 127 estimates, now have 42"
## [2] "Cannot report the length-based selectivity values. This report (__lineFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [3] "Cannot report the length-based selectivity values. This report (__lineFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [4] "Cannot report the length-based selectivity values. This report (__potFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [5] "Cannot report the length-based selectivity values. This report (__potFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [6] "Cannot report the length-based selectivity values. This report (__recFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [7] "Cannot report the length-based selectivity values. This report (__recFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [1] ""
## [1] "Casal2 adolc_casal_flags_on_low_tol model warnings"
## [1] "Estimates were removed because of matching lower and upper bounds. Originally had 127 estimates, now have 42"
## [2] "Cannot report the length-based selectivity values. This report (__lineFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [3] "Cannot report the length-based selectivity values. This report (__lineFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [4] "Cannot report the length-based selectivity values. This report (__potFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [5] "Cannot report the length-based selectivity values. This report (__potFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [6] "Cannot report the length-based selectivity values. This report (__recFretained__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [7] "Cannot report the length-based selectivity values. This report (__recFSel__) is being ignored. This can be done using the Casal2 R package. See the User Manual for more information"
## [8] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
## [9] "estimated parameter 'age_length[asMm0].cv_last' was within 0.001 of lower bound 0.02"
Time series comparisons with CASAL base model results
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on"
## [1] "Removals / Actual catches for line match: no"
## [1] "Discarded catches for line match: no"
## [1] "Removals / Actual catches for pot match: no"
## [1] "Discarded catches for pot match: no"
## [1] "Removals / Actual catches for rec match: no"
## [1] "Discarded catches for rec match: no"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_off"
## [1] "Removals / Actual catches for line match: no"
## [1] "Discarded catches for line match: no"
## [1] "Removals / Actual catches for pot match: no"
## [1] "Discarded catches for pot match: no"
## [1] "Removals / Actual catches for rec match: no"
## [1] "Discarded catches for rec match: no"
## [1] ""
## [1] "Catch time series base model comparison for run betadiff_casal_flags_on_low_tol"
## [1] "Removals / Actual catches for line match: no"
## [1] "Discarded catches for line match: no"
## [1] "Removals / Actual catches for pot match: no"
## [1] "Discarded catches for pot match: no"
## [1] "Removals / Actual catches for rec match: no"
## [1] "Discarded catches for rec match: no"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on"
## [1] "Removals / Actual catches for line match: no"
## [1] "Discarded catches for line match: no"
## [1] "Removals / Actual catches for pot match: no"
## [1] "Discarded catches for pot match: no"
## [1] "Removals / Actual catches for rec match: no"
## [1] "Discarded catches for rec match: no"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_off"
## [1] "Removals / Actual catches for line match: no"
## [1] "Discarded catches for line match: no"
## [1] "Removals / Actual catches for pot match: no"
## [1] "Discarded catches for pot match: no"
## [1] "Removals / Actual catches for rec match: no"
## [1] "Discarded catches for rec match: no"
## [1] ""
## [1] "Catch time series base model comparison for run adolc_casal_flags_on_low_tol"
## [1] "Removals / Actual catches for line match: no"
## [1] "Discarded catches for line match: no"
## [1] "Removals / Actual catches for pot match: no"
## [1] "Discarded catches for pot match: no"
## [1] "Removals / Actual catches for rec match: no"
## [1] "Discarded catches for rec match: no"
## [1] ""
Derived quantities
SB0, SBcurrent, MSY, F_MSY, others…
Comparison plots
## [1] "CASAL base parameter correlation range (excluding 1.0): -0.6876 0.9999"
## [1] "CASAL sensitivity 1 parameter correlation range (excluding 1.0): -0.6894 0.9999"
## [1] "Casal2 betadiff_casal_flags_on parameter correlation range (excluding 1.0): -0.704682058267449 0.999819516983665"
## [1] "Casal2 betadiff_casal_flags_off parameter correlation range (excluding 1.0): -0.697745743037247 0.999863100354264"
## [1] "Casal2 betadiff_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.722472902754433 0.999845201096008"
## [1] "Casal2 adolc_casal_flags_on parameter correlation range (excluding 1.0): -0.704683609734695 0.99981954195823"
## [1] "Casal2 adolc_casal_flags_off parameter correlation range (excluding 1.0): -0.697745743037247 0.999863100354264"
## [1] "Casal2 adolc_casal_flags_on_low_tol parameter correlation range (excluding 1.0): -0.719263523071944 0.999846316745602"